NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187843_10017449

Scaffold Ga0187843_10017449


Overview

Basic Information
Taxon OID3300019093 Open in IMG/M
Scaffold IDGa0187843_10017449 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_43
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3787
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067404Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0187843_100174491F067404N/AMRTESYQLFSQLLEGYLNEASTSLDLILDNPGGKQVVKHLHTDMGLAHDQDYRQVEKISWSELKDARRGAWVIIKGTTGTGAIRATASGSYEATASSGGEVDSFADGRGGNVIDFLKSKIGKLNKFYVGNNTSAVRDKQKKRKDQQTGKDTSVVSVDSLTKKFKPLWVKAITAAIADVKGHIANQIKNDAFDKAAKKLEHVKRLQSAIESLETDSDTPGSVKNAINVAVLMAASHHYPEQTGAISRSGYGSGYNAERSEGGSQLMKDIAAGDQKKLGTVLTFFKRSLISG

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