Scaffold Ga0187843_10005640

Overview

Basic Information

• Taxon OID: 3300019093
• Scaffold ID: Ga0187843_10005640
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_43
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7167
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038997	Metagenome / Metatranscriptome	164	N
F091223	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187843_100056402	F038997	GAGG	MQMLRNDLFKPWFVGEKDWGFEIIDGEFKGVTVQIEKLDWPEEGKNELSLDYHIVHKSELITDEDIKSDKFKVVMDIIINDILREAIDDLKQTRDYDTTESST
Ga0187843_100056409	F091223	GGAG	MPLFVVDAIQMFRTRYVIECKEAEHAADTVTMSEADEFSQMDLGERILTTKEITYEEFHRMNTALEKGHGDGTSYQAETGSPWMGEKMIYVVNYDTVTEE