NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187843_10000362

Scaffold Ga0187843_10000362


Overview

Basic Information
Taxon OID3300019093 Open in IMG/M
Scaffold IDGa0187843_10000362 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_43
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33511
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (86.27%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027776Metagenome193Y
F044360Metagenome154Y
F056414Metagenome137Y
F064409Metagenome128N
F086807Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0187843_100003621F056414N/AKAAACFGGAQIDKVAASLQRENPEAFWRESELHQRNFYHEPMSYGSPVPHRSYVQRLVVRRRELDNEQRLIMAQNHYLEQTYQIGVGA
Ga0187843_1000036219F086807GAGMTHRIVVDLQTGVTTQVEYTPEEQAAHDAAVAAQQAAETAVTETVTEPVAETPETQP
Ga0187843_100003622F027776GGTGGMNPLQVEIAKTVFAHLPPVGNIGLISREELATMLHTACTDAALAGWARGTETAQKRLDAEMAILRQELKALQTELVYEQTK
Ga0187843_1000036243F044360AGGAGMATKKFLETDVYPSDRFKVFEHSLMVEMETAKMEHEKVWGIDRVIDLVDAEFRRKVSAQRERIWEASQAQDEERLEKAVKGMIAAYKALTRWATEAGIEQMPKIDCMEYQMGDGSLMVIVRDKQMATWYDQFRKLPANRSVWTLAELEVVMNGPTLSQVRDIKAALPGTTMVKVEAQGSSGFEDMKNDIDISKPFRGTKLFDTAEAEVHAQSGKRRK
Ga0187843_100003628F064409AGGAGMKRFNLKGVSKTYALRAAHYRRCAKNQGVTGLDFSETALRELHAWESRGEGSVDKSKNGFAYGKWCIDLSVAMWVEDLKKGNFCKVEFLRTRIQKLHNTKKIEAIIAGAFFPYDLKEKANENT
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