Scaffold Ga0187852_1005038

Overview

Basic Information

• Taxon OID: 3300019082
• Scaffold ID: Ga0187852_1005038
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8635
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037652	Metagenome / Metatranscriptome	167	N
F080330	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187852_10050381	F080330	AGGA	VKKTAPFLLLLLAAGTVLAGDPFAGRDASPSGLADGVRLSTRLVENVYLMPEQITKLIFPKAVEEVSVNTQVINIGRNPPDSKEYYLLLSPKVAQGDVDMHVVLEGKTYTFRLIVGREKVNYRKTYTAEGGGSGRSLRKVPPLAPTEINTTRLIHIINQSMRDPNYASVVAKDMGSSPQGATYLWDGAEVVLQSAWHYYPQDVVILQVEVHNPTSRAVYLSATQLEPFIANTTFHYLLTQQGTKVLLPGQTDIKY
Ga0187852_10050382	F037652	N/A	MDPRPYTHFWSEEPEARRRAWRPTDEVRRRLMRLWVIQALLLGAIVLVAGVLTRESKRVPPIYAKLPNGVIFETTTGDLQMDRLARTELVNNVLQILYYQEGSFNYLATIRQNVKPQLVGRFRAEMQDASQQTNSTVYLNVVETFEALNVPAKGFDAVTKGVLSKRTSQESASAPIYIRTRWLLAGDRYLLSRVQ