NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0188868_1000753

Scaffold Ga0188868_1000753


Overview

Basic Information
Taxon OID3300019077 Open in IMG/M
Scaffold IDGa0188868_1000753 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Baltic Sea - GS695_0p8
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)997
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED164(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)54.570232Long. (o)11.332183Alt. (m)Depth (m)19
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012403Metagenome / Metatranscriptome281Y
F075986Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0188868_10007532F075986AGGAGMKYTDDQIADACMKCVNDWDMDTLLQFAYDEMFHHYTEVASAAGLADFMQEMRDED
Ga0188868_10007533F012403GAGMRIKPINPVAKAVAQSRRRTQAVPDKTKYNRKKDKHNANQSRENEVTESETPQSKA

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