Scaffold Ga0188868_1000309

Overview

Basic Information

• Taxon OID: 3300019077
• Scaffold ID: Ga0188868_1000309
• Source Dataset Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS695_0p8
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1517
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 54.570232
  • Long. (^o): 11.332183
  • Depth (m): 19

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016757	Metagenome / Metatranscriptome	245	Y
F032478	Metagenome / Metatranscriptome	180	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0188868_10003092	F032478	AGG	MYWEVGIKMDGISGVYDVHPQPLEQPIWNHAVEHALDMAQALYPQSHIELEFVKEFDGA
Ga0188868_10003095	F016757	AGGAG	MPKYEVKVEATTQRDIIVDAVSEYEAWVLAQIEMVGLVGGENTQVISSKEIEDA