Scaffold Ga0188856_1000761

Overview

Basic Information

• Taxon OID: 3300019076
• Scaffold ID: Ga0188856_1000761
• Source Dataset Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS683_0p8
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 554
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 54.570232
  • Long. (^o): 11.332183
  • Depth (m): .3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049595	Metagenome / Metatranscriptome	146	N
F084181	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0188856_10007611	F049595	N/A	SKGGEVMQQVDYRFENHGSIWLCHPMTADAKDNLRQACDADDAPFNISWCDALVVDPRFVNDVAKQLTDKGWIIE
Ga0188856_10007612	F084181	GGTGG	MKTKTYDVQIEAIVTKTIRVNAIDENAAYELAHEIFTVTRDNHEERYEQHTLNILEVSDEDRNEKPAWERGDR