Scaffold Ga0193356_10053461

Overview

Basic Information

• Taxon OID: 3300019053
• Scaffold ID: Ga0193356_10053461
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_111 - TARA_N000001823 (ERX1782123-ERR1712241)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1229
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Blastocladiomycota → Blastocladiomycota incertae sedis → Blastocladiomycetes → Blastocladiales → Blastocladiaceae → Allomyces → Allomyces macrogynus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_111
• Coordinates
  • Lat. (^o): -16.9581
  • Long. (^o): -100.6588
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021472	Metatranscriptome	218	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193356_100534611	F021472	N/A	SLFFRKVSGERPTAKVVCIAPGKQDTIVLLNHNERVKSMVENAIKDAWPSGIQWQEEQEVLGHTVHDIKINGYPWWTSEANIDNNRIINMIVQNLSKINLRLVGGINIKGGTDSLFFIEDPGSNAQFSSISLCQKNRLRLVDCKEESQCVRQAIANSGFRIDDESLKEHHAKMRLNGRPWHCSGAEAVHARQLVARISEAMLQRGWALTDAIDISRRQDDKSMLLFRQCVPTTATFSCICLTSVKTDQRRLDDSWVTVSRDHLRLINFSPGDQEVLKTCIMENYLPGVISIPSSGREGNSVKFDLAGSPWSSHGGGLHARSLLVHLFAAAVNLGFQIVASADVSSKSVIDSPGFLEYPLDVDSIYLVKIPTQGKLEQSLLSSYQEAMM