Scaffold Ga0193082_10172866

Overview

Basic Information

• Taxon OID: 3300019049
• Scaffold ID: Ga0193082_10172866
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_064 - TARA_N000000531 (ERX1782179-ERR1712232)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1003
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Indian Ocean: TARA_064
• Coordinates
  • Lat. (^o): -29.5333
  • Long. (^o): 37.9117
  • Depth (m): 65

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034059	Metatranscriptome	175	Y
F082729	Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193082_101728661	F082729	N/A	KFILTNAEWGKYSVDVCTALKMKQLHPDLLDIDIISGREMTQKRLQKNHVNMTFWYEIGLAMLSGGGKKHIDEVVKCHKNPDCRLDPCWDYYDWVVCKPRYMEQCRKAGIPMISTIIYKNGFDPKQCMKDVQKMGWDKFFVKVGTFSFFGNGAIHAKPRISLGRGPSTLRNMQRQTKQLRFFFYSLTP
Ga0193082_101728662	F034059	GGA	VACKALAERVYQEVLKAATWQGKHQTPLLNRIDIGVVPRTGSDSLNKTDNTYFMNEIEMISTTWMDRYSPISVQDMMAQAGVKHTLELLVGLLNAKRHVPD