Scaffold Ga0193556

Basic Information
Taxon OID	3300019041 Open in IMG/M
Scaffold ID	Ga0193556_10001697 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_138 - TARA_N000003007
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300019041 Open in IMG/M

Scaffold ID

Ga0193556_10001697 Open in IMG/M

Source Dataset Name

Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_138 - TARA_N000003007

Source Dataset Category

Metatranscriptome

Source Dataset Use Policy

Open

Sequencing Center

Canada's Michael Smith Genome Sciences Centre

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3960
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

3960

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	North Pacific Ocean: TARA_138
Coordinates	Lat. (^o)	6.3306	Long. (^o)	-102.9531	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

North Pacific Ocean: TARA_138

Coordinates

Lat. (^o)

6.3306

Long. (^o)

-102.9531

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000039	Metagenome / Metatranscriptome	4032	Y
F004929	Metagenome / Metatranscriptome	418	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0193556_100016972	F000039	AGCAG	MFPLQALGKDLERSEVKKWLANILEILMAERAKDQRKSEFEQLDILIKKHEDLIPTVMKTQVMVDLYWKCYAYGDELKPHIEFLDAIMLSSTRDIAPSCVENVDELIERQEKSLVQLETKRGVVKELIDKGTVLLQNPDKPRFLDSHVQRIQEGWDDTKLKAQDRLTLLVDTKSAWEGYADGTVKIAEEFDKCEEETKKVKKSFNLELAFEDLAKRQGIFAQTKESVSGTFNQLKTDYETMCLTLPDDKKTQLKKELAPVEEKLSLLNKFEEKVKKIEEFCNALKSFTDSLKTIDNWMVGAAKELEDIKSSSDKLTPEDRVSRTMDLQEDIAAKYEIIEKNVSCELELLPQGEKVPQDAQDHKDELNRIKKYVIDLKDRTAKECNSYSEDVKYWAEYKTGIKEFTPWMLSAEKASTEGLSKPTNFAEAEALYTKVSAFDNNCQTHLKLLNAATAAAQKMTTHKEADDEVAALKARYEKVKSVSDNWMKKTDTLVKEWKLLDTTVTELNAWVAKDKTAEGENQFSLEKMESTLGELKNIFKQKEKLVDNL
Ga0193556_100016974	F004929	AGGA	MRHQKMAEWMENVEKAIARIMADKVYTSAEFKRERDNFHSLCKDLEKVEVKKWLAHILEILMAERAKDQRKSEYDQLDALIKKHEELIPWVQKVSIQVDLYWKCYAYGDELKPHIEFLDGIMMSSSREIAPSCVENVEELIERQEKALVQLETKRNVVRELIEKGNSLLQNPEKPRFLDEHVTRIVEGWDDTKLKAQERLKLLQDTKAAWEGYADGQTIIESAFEKAEEEIKKIKKRFNLESAKEDLVRRQQIFEKTKKELQDVYDKLKADYDVMCITLPEDKKNLVQKELAALTEKMAILQTFEEKVKKIEDFCNNLELFDNTNKSLDDWMVRAADEMDKIKNHSHQMVPEDRVAVCMELQEDIAAKVIVIEESIQREQELLPQGDSVPKDALEHKEELLRIHKFVLNLQEKVKQECAAFSEDVKFWAEYRTGIKEFTPWIENAEKESADGLGKPSSLPEALALFDKISLFDKSCLGHLKILESAEAASKKMTTHKEADDQIVEMRNRYQKVKKVSDTWMSKVNTLVQEWKLLDSTVNELNDWVAKDKTAEGENQFSLEKMESTLSELKNIFKEKEKLVEDL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0193556_10001697

Overview

Ecosystem & Geography

Associated Families

Sequences