NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193545_10077941

Scaffold Ga0193545_10077941


Overview

Basic Information
Taxon OID3300019025 Open in IMG/M
Scaffold IDGa0193545_10077941 Open in IMG/M
Source Dataset NameMetatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001565 (ERX1399745-ERR1328126)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)696
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean: TARA_151
CoordinatesLat. (o)36.1715Long. (o)-29.023Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F100090Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0193545_100779411F100090N/AVIYNPHSTLGQGFNLTSAECFDPTMVAAVNLFKEWAAFNSDGSDGYCYDNQGTGYQQGQTYISCMGCMKYTCMSRPCEDRDGSLAKMFWVLDSLATQCCQNCEGKIFPPNTVVEDKSMNDECNTVEHSVCKTSSVESVGTIEVSYMAGSCCLDQESWLPAGTTVLEKASCSARTCVEGRPAQWERSTKYQGGCGCCEYNSSLVIPGECQTMTDGSEACCCDGQMVKTIDTD

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