Basic Information | |
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Taxon OID | 3300019025 Open in IMG/M |
Scaffold ID | Ga0193545_10035765 Open in IMG/M |
Source Dataset Name | Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001565 (ERX1399745-ERR1328126) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | Canada's Michael Smith Genome Sciences Centre |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1006 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | North Atlantic Ocean: TARA_151 | |||||||
Coordinates | Lat. (o) | 36.1715 | Long. (o) | -29.023 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000049 | Metagenome / Metatranscriptome | 3277 | Y |
F042166 | Metagenome / Metatranscriptome | 158 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0193545_100357651 | F042166 | GGA | MPTGDELKPHIEFLDGIMLSSTRDIAPSCVENVDELIERQEKSLSQLETKRAVVKELIAKGKQLLENPDKPKFLDSHVSRIEVGWDDTKEKAQNRLTLLQNTKDAWVGYAEGLETIAVEFEKGDEEIKKIKKRFNLAAAFEDLEKRQKIFNDTKNTIEGMFKNIEKNYDCMTMTLPEDKKDFVKKEVKAVSEKLVVVEKFR |
Ga0193545_100357652 | F000049 | AGGA | MRQTKMIEWMENVEKAISRIMADKVYTSAEFKRERDNFHALCKDLERAEVKKWLQQILEILMAERGKEERSEQIGKLDGLIKKHEELIPTVLKTQVKVDLYWKCYAYG |
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