Scaffold Ga0193545_10010785

Overview

Basic Information

• Taxon OID: 3300019025
• Scaffold ID: Ga0193545_10010785
• Source Dataset Name: Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001565 (ERX1399745-ERR1328126)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1625
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean: TARA_151
• Coordinates
  • Lat. (^o): 36.1715
  • Long. (^o): -29.023
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001478	Metagenome / Metatranscriptome	687	Y
F031514	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193545_100107853	F031514	AGAAGG	LNEKFGLYVERPFYIVSNMDSHKYLDLINNRNMVVKTRNGRNTQVWWFDQRSLTIKTKLNNQSFDITSSGRSNNMQIWSTNSNWW
Ga0193545_100107855	F001478	GGTGG	MDGEFLVNLKDSRVLDVQSNLDQENRNLIVHKRHGGLNQQWDVVYVDEWKGEPKKGELNEEFGLYVERPFHIVSALKDGRYLDLINNRNMVIKTANARNTQVWYFDQRSLTIKTKLNNQSFDITSSGRSNNMQVWSTNSNWW