Scaffold Ga0193569_10132060

Overview

Basic Information

• Taxon OID: 3300019017
• Scaffold ID: Ga0193569_10132060
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_152 - TARA_N000002781
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1132
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean: TARA_152
• Coordinates
  • Lat. (^o): 43.6904
  • Long. (^o): -16.8544
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014356	Metatranscriptome	263	N
F035620	Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193569_101320601	F035620	GAGG	MSYGGVIGRPAWCMVGSCLVVDKRRLSVCNMLVVDCSYRSCMVDLLVVVVGSDRGRDDGSLVASVAMADTGERASHSMGCVEEALRAGQGSQAGADKQDRLMTEHGCPSS
Ga0193569_101320602	F014356	GAGG	VPTLETKCDQEDGGHILELRTEEKCQDVVRTVCVERHNVVDNEVCAFSYTLHPVPTEAKLVEALWTEVCHQETICLNPHHAQPSYGAPPAYCHEEIHETCALEPVLEPVLRPVTVSLPQPVEVCINKQIVLPYLECEKVKDRHCMVVPSAGKGYKYQIDKCTVELGEPACQETLLQLPQQACLQKIERVNTVYTTPEKVSYSG