Scaffold Ga0192926_10037040

Overview

Basic Information

• Taxon OID: 3300019011
• Scaffold ID: Ga0192926_10037040
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_076 - TARA_N000000871 (ERX1782184-ERR1712079)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1604
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean: TARA_076
• Coordinates
  • Lat. (^o): -20.9514
  • Long. (^o): -35.2273
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078183	Metatranscriptome	116	Y
F089705	Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0192926_100370401	F078183	GGA	MSDTLNGWLNSSTSTKPCLDWDVKELQQLQALLYLARGSQFDDIYRRTEDNRRLRPHVLSDLATNWAGLNKLAESHSDPRLKVVRRDGHCHEAVMWFVHHLSADMKELLAAAKVPIPLLSPARHGLCYSDSLDGEAERICDAYREQVTCASCHSNELPPSH
Ga0192926_100370402	F089705	N/A	MKIYLSLLLVWTSVEVVMSQADGNPHGWDRTRRCDQQDYDPPCGPCEGVGGIPHGSNNDQIDLTSCTVLGGPEDFPDPVRPVWGNQWTLPIAYEILIGKKTDPFCFQTFPGADSVGDLCYRKQTGSKVYDMNEAKAFREDLELETPVGNMTSTIFHQGTNFWIVNTLPWYVGGVHQCICTQIRDNGVGPKLYYPVQYNWVDNMVFIGRENIHIEYINEQREMDHWAFGPHHLWSEPETGNIIRMWQPFNGLQVYPTGVPEGSVDSSLFADLPPPLCKAGGALMRIGCDDEGYPETEEDTATTTVSPRHPVQGKDIKRAEEKVPRGHYKGVDFSRCRTH