Scaffold Ga0193345_10118923

Overview

Basic Information

• Taxon OID: 3300019002
• Scaffold ID: Ga0193345_10118923
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_110 - TARA_N000001764 (ERX1789384-ERR1719347)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 744
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_110
• Coordinates
  • Lat. (^o): -1.8155
  • Long. (^o): -84.629
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025753	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193345_101189231	F025753	N/A	RPKPHKAKSLGSGPKSNSVGPPINKPGGPQAGPFGYTDKGTYFEDSHFDGFPERIEMIYQGFVWAMEMFYPGQDSVFHGGVHTILEDKVKRETVNLEGDYIVRISGRASPYNINRLTFYTKNGKQFGPWGDRHSEDSVDFDVSAPPGQALAFFSGTIDFGVPLRSVSFHWRPIS