Scaffold Ga0193126_10069451

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193126_10069451

Scaffold Ga0193126_10069451

Overview

Basic Information
Taxon OID	3300018990 Open in IMG/M
Scaffold ID	Ga0193126_10069451 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_011 - TARA_X000001334 (ERX1782458-ERR1711911)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1230
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Mediterranean Sea: TARA_011
Coordinates	Lat. (^o)	41.6666	Long. (^o)	2.7962	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F089813	Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193126_100694511	F089813	N/A	TVFKNIRLPFWLRQIFPLHHSTNLVEQVYRALFGERLFGKCILDRGHVHTFDKRTYNYHLDDCYHLVAADCTKRNTHAILAKEKDNVKHVMIFFENHKFVIEEPALRYTRPTTAFTVKMQTGQERMVTVEVMPDRVVRLLGGLVTVRWSRGILVVDTPTHRVIYNGKVLDVLDKALMAAGDQCGLCGDHNRMRLADIKSSTRCIHTSLISMAHSFRVNSAMGQCAPLPTAAIERLSREKAMCARPRSPLQISYFTPVTQAKVLRHAVLHRAGQVCFSKTMLPECTIGFMAFETLVKEAGFVCLPAAAAETKDILRRVHLGRECTELTTMAVTFTTRVHVAKECRRQ

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