Scaffold Ga0193589_1002403

Overview

Basic Information

• Taxon OID: 3300018962
• Scaffold ID: Ga0193589_1002403
• Source Dataset Name: Soil crust microbial communities from Colorado Plateau, Utah, USA - late stage, 3 min after wetting v1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: QB3 Vincent J. Coates Genomics Sequencing Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5483
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events

Source Dataset Sampling Location

• Location Name: USA: Utah, Colorado Plateau, Green Butte Site
• Coordinates
  • Lat. (^o): 38.712053
  • Long. (^o): -109.695097

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011201	Metagenome / Metatranscriptome	293	Y
F042710	Metagenome	157	N
F096282	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193589_10024031	F011201	N/A	MKKSKAKSKSGHGGARPGAGRPRCWKHRPLKLVRLPVAFVEKILEVAQYMDQNDGQLPFSEAYEASVIISGHPSESLSEEEIKELSAKRKAHKLAQKVMAGDEWVLVSDETFAGF
Ga0193589_10024033	F042710	GGAG	MAENSGENCERSQNFTASSARDCRYVDVLKARAEELGLDSDCVGDKRKRETWEAVLENHGEEKPAKPQFVLKPNQP
Ga0193589_10024035	F096282	N/A	MRFEHRGWIIELFLVGIHHPNYPYKIWEQATAIWKVVIDGRENSGTRNGDREKVLADIKAFIDWRIDDPDMKNIF