Scaffold Ga0192930_10082017

Overview

Basic Information

• Taxon OID: 3300018960
• Scaffold ID: Ga0192930_10082017
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_076 - TARA_N000000879 (ERX1789423-ERR1719357)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1287
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean: TARA_076
• Coordinates
  • Lat. (^o): -20.9406
  • Long. (^o): -35.196
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009310	Metatranscriptome	319	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0192930_100820171	F009310	N/A	LADRPQEGSFVLYRKMEGGMWKTKVTVDNNNMMPKPFLDISVESDRKTKLHVLFNFQEDNKWELKVDRVPGQKMTIEATVNGKKWTGVGNLNQGEMKLNLKMDSEFTGKHYTLDFDLNPSGMWGIHITGDVDGPVDAKWTMQKDYTMGEIVVKYKNQNYAFMQLKGNAEMRGVFPVVFDYVVKYNIKDAMEHQGKAKMKFDGKTPAKKFEMSFAPKTGTPMDLIWNMDFSSGFKYDYDFKMNAVTMEKGNGEYKWVNNGQKFELMTKDTFIVTKQSPFHWMNTMVTGGREWTKMEHTRNIFFDKVNKAQMINKMKIEEHNILDGQTWYHIKYDNTAPKTAFLFTYLPYNMDQAWTYEGGREHTANGGFTLTHKITHGENVIQEAEWVFDVKANDGSKFEMEHLHKMTMTEESPFYGMVYWYTGRYGKN