Scaffold Ga0193560_10113604

Overview

Basic Information

• Taxon OID: 3300018958
• Scaffold ID: Ga0193560_10113604
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_144 - TARA_N000003191
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 870
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean: TARA_144
• Coordinates
  • Lat. (^o): 36.345
  • Long. (^o): -72.7586
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088210	Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193560_101136042	F088210	N/A	PILDFIIGSPAFIQAFIYIYLMGFGFVVIASESPSWKMTRKAQLGIFFWFRLMSRMWGRAWFYLFVAILCFAGLESESGKAVFTVIAGVYLLFISIASFVFSRMAGKKFARLREYIAAGAEGDQMVGRFMRKFDELDKGGKEGTIGSAEIVKVMNEAGRDISNSERHAIQTFLDESCNGYVSKEDWMKMLVEQYQGKDFKQKFL