NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193560_10007186

Scaffold Ga0193560_10007186


Overview

Basic Information
Taxon OID3300018958 Open in IMG/M
Scaffold IDGa0193560_10007186 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_144 - TARA_N000003191
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2528
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean: TARA_144
CoordinatesLat. (o)36.345Long. (o)-72.7586Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055392Metatranscriptome138N
F064373Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0193560_100071862F055392N/AMGFIQEVFDSRAEKLVEVMDKLEKAIGQVMADKIYTSNEFKKVKENFSNLAKNLEHSEVKDWLQSTRETLQAGGGAKGKGGEGDKLNDVLERFDKLVPKVTETHKIADSLWQGYNYTDELTPHVEWLEEKKTLANRDINSNSGAETEDLIEKQEKVIDQLDKKRKVFQAVLDKGTKLVSGPRCPEFLGREVKRATDLWKETNSQALDRLQRLKENQSAWERYENKRNDLTGKLESADGELEDIRKLYDLAAGTEDHKRRLQTAASIRKEIDSVFTAVKEANEIVQVLLTEDMKTVLNDQVEELRQRSTVNDNIDEKLKTIDSFNGKLKIYIGVVDQLEKWNDEGRKRMEELLNPETPFQAEDKVLMTMELGEDISKQLEITESQQSLWNSELGPSKATETSPESKTLETRMEAVKEKLTGLNSQSETEAAKFGEDVKHLADVTNSTKKFNPWVEKSEAKVKAGMRKADSLEDGKVLLEEINKWAGADCEFKPVSFSFTASIQSH
Ga0193560_100071864F064373GGAMKTTLDNGNTAAQKMTTHGEADKTYAENIKKWELVDRAIKEWKAKMEALVKMWEEQAATADKVTNAISDPSASDMKLEDLEAHLNSLKAMFIEKQKMMDAMNQPAA
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