NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193066_10052794

Scaffold Ga0193066_10052794


Overview

Basic Information
Taxon OID3300018947 Open in IMG/M
Scaffold IDGa0193066_10052794 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_142 - TARA_N000003102 (ERX1782406-ERR1712029)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1128
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameGulf of Mexico: TARA_142
CoordinatesLat. (o)25.6168Long. (o)-88.4532Alt. (m)Depth (m)125
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006742Metatranscriptome365N

Sequences

Protein IDFamilyRBSSequence
Ga0193066_100527941F006742N/ATWGFHRLVQRGTHVSFGIMLKFVTIAALATVAASSHEMMKKIHKDMMVMNSMTACWGKGNMMLFKMAVWEATEQCMQENHSNLLKPANPILSLLNQNQEAETLPFPVNNNNPFLSSSRLNSNPFKSSSSKISAWNNLWNGRSKRQVEGLLQPTEEDFKEFLADFEDFKGDIASKMGNLTCVMRKMDMLDNNLQVNMKAYSGDMWDKIDLSQTMAGEDAEWRDMLETHYKDCYDIARSFPQSALNRNPLTKVFGRHMVFFKCAKKAEAKCCGMACANDMLETLYGRNDNYDWTQHGMPQNKYERAAWTMKVMYGTASPEEGAIHEFFFSDPMM
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