Scaffold Ga0193426_10028790

Overview

Basic Information

• Taxon OID: 3300018942
• Scaffold ID: Ga0193426_10028790
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_128 - TARA_N000002295 (ERX1782357-ERR1712003)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1108
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Lingulodiniaceae → Lingulodinium → Lingulodinium polyedra (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_128
• Coordinates
  • Lat. (^o): 0.001
  • Long. (^o): -153.6387
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023517	Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193426_100287901	F023517	N/A	DCSAAKCCKTTGYRCIKSGEAKPTCMKTCMKGKPCTVLTNKMTFDVKERKSLFCFSVYTENTGSTKKSYELELLKLVYEKKASIFACDKAEVYGDVEVAIGGDVMVEKVEDEKGTFHFAKRKHAGTWINTGMYQQIWKKIGAKGTYAGYDWTVKADADAVFFPAKLVARIAQLPVPATGAFLINCEGVKYGFFGNLEVISKTAFSILAANIDTCDSDTVSDWKVGIDKGKYGPMGEDLFAEMCMRKNGVTGMEVFDITKDGCCQAKRPGNEKKNKKWQPDCSTTSTPAMHPFKKPAEYAKCMEEAAEVV