Scaffold Ga0192818_10109606

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0192818_10109606

Scaffold Ga0192818_10109606

Overview

Basic Information
Taxon OID	3300018940 Open in IMG/M
Scaffold ID	Ga0192818_10109606 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_022 - TARA_A100000536 (ERX1782257-ERR1712105)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	694
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Mediterranean Sea: TARA_022
Coordinates	Lat. (^o)	39.8312	Long. (^o)	17.3952	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F044431	Metagenome / Metatranscriptome	154	N
F103061	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0192818_101096061	F103061	N/A	KFNEIQKKTNSITDHELFKIIDEENISIRDFNEDDIITIERSEFNCNGKTIKAFDVSMGWTWSEEEINPKKGEKENGKNNN
Ga0192818_101096062	F044431	N/A	MVKIITNQSGAKGFVCQGQFITDPYVTECMRSTVDPKEYYGLTDDELIHFKHLEPLKEEPQPSYEELVKGLKGMKFFIVRWSGDACDHGKLFDDKCGCHTSNRVDDPIKFFNEYQYDNDTIKDLKEMELGEKYHVDEMMQDIEIMRVE

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