Scaffold Ga0193083_10006437

Overview

Basic Information

• Taxon OID: 3300018927
• Scaffold ID: Ga0193083_10006437
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_064 - TARA_N000000531 (ERX1782133-ERR1712125)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1196
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Prorocentrales → Prorocentraceae → Prorocentrum → Prorocentrum minimum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Indian Ocean: TARA_064
• Coordinates
  • Lat. (^o): -29.5333
  • Long. (^o): 37.9117
  • Depth (m): 65

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000446	Metatranscriptome	1128	Y
F102451	Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193083_100064371	F102451	N/A	MGRYGTSAHIAPSSQMEYSQLEEIVVKPPREKCSKIGSSCLSTKCCKITGYNCFEKKPGTATCMKSCIPGVNGTCLMPDTLVPRKQAIGVPGTTLFCFTLYMQDTGSTKQFYDLSLLRTSLFLGASLFGCEAYKVYSDVETWLSPGEVNTVKVDDVNGDFHFGKRKLTGTWINSPIFIQVWKAIRTEGLWASHDWTVKVDADAVFLPMRLRTRLSGQKATARASTWRIAST
Ga0193083_100064372	F000446	GGAG	VNYGFFGNLEVISHQGFSTFLANLEDCVSALNWKGREKATGMEAWGEDLLMQRCMDLHGVDKVEAFDITTDSMCKAFRPKGEKKNAKWRPNCALTSTAAMHPFMKPFDYFECLKATQR