Scaffold Ga0192989_10011468

Overview

Basic Information

• Taxon OID: 3300018926
• Scaffold ID: Ga0192989_10011468
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_092 - TARA_N000001309 (ERX1789376-ERR1719276)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1878
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Pacific Ocean: TARA_092
• Coordinates
  • Lat. (^o): -33.6895
  • Long. (^o): -71.998
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049564	Metatranscriptome	146	N
F059939	Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0192989_100114681	F049564	N/A	MTWDELLEHMDNLVEWGQGQIKGWHSQAAKFIQVKGTEATTEKACVSMDLKSRVSFQNKLAGICEDMCKEVGAYPQCAQCPGFVAPDSTPGVMTWDELLEHMDNLVEWGQGEIKGWRSQAAKFIQTKEGSCLSSDLKHRASVQNRLAGICEDMCKEVGAYPNCAQCPGFVAPDSTPGVMTWDELLEHMDNLVEWGQGQLKGWRSQAAKFIQVKDNTAACTSEDMQHRAELQNKLAGICEDMCKEVGAYPNCAQCPGFVAPDSTPGVMTWEELLSHMDNLVEWGQGMIKDWHSQAAKFLQIKAHF
Ga0192989_100114682	F059939	N/A	MRSLFFLVALPLASALLAVKDSSVEKACVAEDSTMRVQFQNKLAGICEDMCKEVGAYPQCAQCPGFVAPDSTPGVMTWDELLEHMDNLVEWGQGEIKSWHSQAAKFVQLDSKSCVANDLSHRSAVQNKLAGICEDMCKEVGAYPQCAQCPGFVAPDSTPGVMTWDELLEHMDNLVEWXXXXXXX