Scaffold Ga0190273_10301760

Overview

Basic Information

• Taxon OID: 3300018920
• Scaffold ID: Ga0190273_10301760
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1071
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.4668
  • Long. (^o): -109.6253

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001245	Metagenome / Metatranscriptome	737	Y
F016872	Metagenome / Metatranscriptome	244	Y
F020315	Metagenome / Metatranscriptome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190273_103017601	F001245	AGGA	MSDKALGMLKHMRKQILGKPAPYVMVHGAAMSIGVKPGGSECHVLVDELLQAGYIRRYPSPSLTAHGLYRLTDSGVFAADDAALSEAGPATPVIDTLSLRGALG
Ga0190273_103017602	F016872	AGGAGG	MHDDQTVKDATRLLGAFSTNHAEARMVSPHGMDRPFYPGWADAEQAGLNRVRRDAAIRWLVEKNMLQSEGEPENPLDTGEGFYSKYGSVFRITDAGRELLEEVRERRQA
Ga0190273_103017603	F020315	AGGAGG	VDEKSLQLLKVMREQLGETTGRTVDAVAAAKSLGMYPGTLERSLLYLVRAGYIEEYADRAMASRDGMFLITLQGIAAIDNA