Scaffold Ga0193615_1000485

Overview

Basic Information

• Taxon OID: 3300018916
• Scaffold ID: Ga0193615_1000485
• Source Dataset Name: Soil crust microbial communities from Colorado Plateau, Utah, USA - late stage, bundles v1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: QB3 Vincent J. Coates Genomics Sequencing Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15141
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events

Source Dataset Sampling Location

• Location Name: USA: Utah, Colorado Plateau, Green Butte Site
• Coordinates
  • Lat. (^o): 38.712053
  • Long. (^o): -109.695097

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001042	Metagenome / Metatranscriptome	794	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193615_100048512	F001042	AGGCGG	MTTSHPIEGNFSSHFLKDSKAEADDKIVIDKLLVNKLTELLINSIYSVHVSRRSEFFLTSLDMHLADFSISNKNDIVCREFTEKSSLLLESYQKDVPKSLGKAESCLGE
Ga0193615_10004854	F001042	AGGTGG	MITSHPIGGNFAADFPKDSEADADDKIVIDKLLVNKLTELLINSIYSVHVSRRSEIFLTSLDMHLAENSITNKNNKASHEFTEKSSLLLESYQKAVPKLLVKAENCLEEAIDLINLIVSASEAEGDNG