Scaffold Ga0193548

Basic Information
Taxon OID	3300018907 Open in IMG/M
Scaffold ID	Ga0193548_10000605 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX1399744-ERR1328122)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0193548_10000605 Open in IMG/M

Source Dataset Name

Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX1399744-ERR1328122)

Source Dataset Category

Metatranscriptome

Source Dataset Use Policy

Open

Sequencing Center

Canada's Michael Smith Genome Sciences Centre

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2306
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Scaffold Components

Scaffold Length (bps)

2306

Total Scaffold Genes

1 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

1 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_151
Coordinates	Lat. (^o)	36.139	Long. (^o)	-28.9598	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_151

Coordinates

Lat. (^o)

36.139

Long. (^o)

-28.9598

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F013270	Metatranscriptome	272	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0193548_100006051	F013270	N/A	RLQLLRSQHKMARLLLVAALCLASAKAAVIPVEEIVDNLQSFLTAPEESGLRLKRSTGEWDKEFDLSSMGILFQLKYNNPANPFEGGRAHVKVPGARFIRNAPFDDMDLDIEFNGGSAIDGLFDMKVNYKFIQKFMFLADRPQEGSFVLYRKMEGGMWKTKVTVDNNNMMPKPFLDISVESDRKTKLHVLFNFQEDNKWELKVDRVPGQKMTIEVTINGQKWTGVGNLNQGEMKLNLKMDSEFSGKHFNVDFDLNPSGMWGLHVTGDVDGPVDIKWTMQKDFTMGEISMKYKNQNYAFMQLKGNAEMRGMIPVMFDYVVKYNIQDAEQQQGKAKLKFDARTPAKRFEINYAPKTGTPFEYVFDFDLSSGFKYDSDLKMNGQVVEKATGDFTWVNNGNKFEVKSDETFTQTKENPFYSFNTWFLFGGRYVEKMDKTRNFFFDKVNKAQLINKMKIEEEVTLDGQTWYHIKYDNTAPKTAFLFTYLPYNMDQAWTYEGGREHTANGGFTLTHKITHGENVIQEAEWVFDVKANDGSKFEMEHTHKMTMTEESPFYGMVYWYTGRYGKNVERKMTVFFDKINKSILFVPKMKMDTTLAIDGEKISEFVFDNTQAKKHIKFFYSPDAYTKDYLFTDEWEYPGHSGCKWNTELKRGGVSIWNWVGDYSFVNNANKFEIKTMDKIVQTPMSPFYGLDHFYLGRYYKTGGRQRTITYEKKNRNFLLGKLFVENTITLDGEKFSQEKLDTRSTPYTMVWFSQPVRGLFPITRDITG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0193548_10000605

Overview

Ecosystem & Geography

Associated Families

Sequences