Scaffold Ga0192862_1049124

Overview

Basic Information

• Taxon OID: 3300018902
• Scaffold ID: Ga0192862_1049124
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_066 - TARA_N000000790 (ERX1789490-ERR1719234)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1077
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: TARA_066
• Coordinates
  • Lat. (^o): -34.9363
  • Long. (^o): 17.9366
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010519	Metagenome / Metatranscriptome	302	Y
F085100	Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0192862_10491242	F010519	AGG	MTQKTILFFSWSSIRSRGRRIGDWLNLMGVLSISIVDFLANLLGESKLNSLASRSSKLGDALLRGNSGVFNLWDSDALLLSEVLTADSWERDWLVDTGLDWLRVGNLNSWLNRGDNRDIVASLLGNLLAVVVSIAVVSVSWGWLADGDHLGVTLLLEGNLNGLGSGGLSLLLVRVCADFVVNFLNALGTDSTGDWVALFYINNDLDGKLNWVADSLKSWGADFGGLNNILN
Ga0192862_10491243	F085100	AGCAG	LLITVVGLVVDRGRGMISWGMVDCMVNGMVGNWGMVGNHWGSMNCMVNNRGVNCMVNSRGSMMDSVSTESCERNGWPTSHKGDKSNQSKDLHDVVVWK