Scaffold Ga0193547_10010696

Overview

Basic Information

• Taxon OID: 3300018895
• Scaffold ID: Ga0193547_10010696
• Source Dataset Name: Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_011 - TARA_X100000009 (ERX1408504-ERR1336912)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 964
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean: TARA_011
• Coordinates
  • Lat. (^o): 41.6686
  • Long. (^o): 2.7996
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029759	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193547_100106962	F029759	N/A	GAFWALLGLNLMVFGWALYAHARVRANEKVLESLDWETLANLTGEVGAMKRSLQKVNNRINGMTAADPVQMLQELPKLQNATQPNGRIGG