NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0193603_1018036

Scaffold Ga0193603_1018036


Overview

Basic Information
Taxon OID3300018894 Open in IMG/M
Scaffold IDGa0193603_1018036 Open in IMG/M
Source Dataset NameSoil crust microbial communities from Colorado Plateau, Utah, USA - early stage, bundles v1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterQB3 Vincent J. Coates Genomics Sequencing Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2439
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events

Source Dataset Sampling Location
Location NameUSA: Utah, Colorado Plateau, Green Butte Site
CoordinatesLat. (o)38.712053Long. (o)-109.695097Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063207Metagenome130N
F074217Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0193603_10180362F074217AGGAMSQQPELTPKQQALMSFLNQLATTPLTPEALAQGNQLLDAAADECRQQQDSLRQQQGTSTQQPGN
Ga0193603_10180366F063207N/AMARFNTDNNQQHHQSPIIIPPSARQTDFDFDEEKVPVSQKLGDFTDKAFGFIFNPNVIKFGILLFAGFCIAINLAGYYDLVNQVLGSRLDEFGRTLPVEAPISQRIVSSIVRFPILGNLIVFLDSLTGGIVALFGAIAIWFVVQGLEIAGRFHLYFEGSAENLLYKQNRRRYEAPNNSNPATKRAYRLVKSETLSILRWLSIASLVAYAADIHAMHLTRPWLDNLGNPLWINVIWNGLAVAGVEL

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.