Scaffold Ga0193258_1124893

Overview

Basic Information

• Taxon OID: 3300018893
• Scaffold ID: Ga0193258_1124893
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_092 - TARA_N000001305 (ERX1789445-ERR1719354)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 869
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Pacific Ocean: TARA_092
• Coordinates
  • Lat. (^o): -33.688
  • Long. (^o): -71.9903
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068121	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193258_11248931	F068121	N/A	MKFSNPLLALSALYSADPFTVTAPKRVGVPASADQEIERRINLSRADHENRNQYNELPSGKLNPSPEDYTIWKDDKGRPWKLNAEPNAAYHQPMPKEIAFIRAYLGMIIPFLRVPNLKFISPNADGRYSEVCANRYTGELVIDQKIIGTFNFCKDAPDAMQDGKLPTTGEHEQLDIIPHKEYGWDYKHIAVGVEIGIKTVPVILGKLDSK