Scaffold Ga0193607_1000842

Overview

Basic Information

• Taxon OID: 3300018892
• Scaffold ID: Ga0193607_1000842
• Source Dataset Name: Soil crust microbial communities from Colorado Plateau, Utah, USA - early-mid stage, bundles v1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: QB3 Vincent J. Coates Genomics Sequencing Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14755
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events

Source Dataset Sampling Location

• Location Name: USA: Utah, Colorado Plateau, Green Butte Site
• Coordinates
  • Lat. (^o): 38.712053
  • Long. (^o): -109.695097

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005661	Metagenome / Metatranscriptome	393	Y
F006886	Metagenome / Metatranscriptome	362	Y
F058553	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193607_10008426	F006886	N/A	MYSEFDSDFDYLNSETPQQIEQPNPVKAPEVTNIERFWTLTGNWGEFGSYFGVGLSASLIVRAITVLIPAAVILIPAASLGLLVHTLTADGSAKLRSQLILIAVGTALLSANWDAWLAWVIANSQLLVFSFAVIVITFGFVGTQIWSKLNVSK
Ga0193607_10008427	F005661	AGGAG	MQIRVGKTSGAAHVAQEFGYNPAQYGNLTAELVHDAARAAKISDIQKQLATAMNRHVAKYRANKVEIERLTLEAIENGLSDKTEIDKYVAKAIIAGAKHDQHIVNLNHKLQQELGLIKVEGASTQTLANTGFRQRLLLIKANHTAKGQIQLHSFAQSLKAIQASPQQAIDMQQKRANFNAYINAKDFDPIPAVSGVSAGGNCSGMGNNSKGFLDSLFDYFSGRK
Ga0193607_10008429	F058553	AGGAG	MAQTRAVLPARFVPLADELLATTGANDYSTLIGILLSRYGKHLLNTWEIANCPQVAAVQQPIADMSVEQPETFTPMEF