Scaffold Ga0193607_1000037

Overview

Basic Information

• Taxon OID: 3300018892
• Scaffold ID: Ga0193607_1000037
• Source Dataset Name: Soil crust microbial communities from Colorado Plateau, Utah, USA - early-mid stage, bundles v1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: QB3 Vincent J. Coates Genomics Sequencing Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50737
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (71.01%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events

Source Dataset Sampling Location

• Location Name: USA: Utah, Colorado Plateau, Green Butte Site
• Coordinates
  • Lat. (^o): 38.712053
  • Long. (^o): -109.695097

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026168	Metagenome / Metatranscriptome	199	Y
F074217	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193607_100003727	F074217	AGGA	MSQQPELTPKQQALMDFLNELATTPLTPERLAQGNQLLDAAADECRNLQQSIKQQAEVTN
Ga0193607_100003734	F026168	AGGA	MTVGDRPLRPQPPPSFEAQLKALPPAVRSVAESLALRDMEGAKRYMALYLSANRK
Ga0193607_100003756	F074217	AGGA	MSQQPELTPKQQALMDFLNELATTPLTPEALAQGNALLDDAADECQQQQDSLRQQQEGANNA
Ga0193607_100003762	F026168	AGGGGG	VSETLGVYNEGDRPLRPQPPPSFETQIKALPPAVRSVAESLALRDMEGAKRYVALYFSANRGVKI