NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193607_1000037

Scaffold Ga0193607_1000037


Overview

Basic Information
Taxon OID3300018892 Open in IMG/M
Scaffold IDGa0193607_1000037 Open in IMG/M
Source Dataset NameSoil crust microbial communities from Colorado Plateau, Utah, USA - early-mid stage, bundles v1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterQB3 Vincent J. Coates Genomics Sequencing Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50737
Total Scaffold Genes69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (71.01%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events

Source Dataset Sampling Location
Location NameUSA: Utah, Colorado Plateau, Green Butte Site
CoordinatesLat. (o)38.712053Long. (o)-109.695097Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026168Metagenome / Metatranscriptome199Y
F074217Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0193607_100003727F074217AGGAMSQQPELTPKQQALMDFLNELATTPLTPERLAQGNQLLDAAADECRNLQQSIKQQAEVTN
Ga0193607_100003734F026168AGGAMTVGDRPLRPQPPPSFEAQLKALPPAVRSVAESLALRDMEGAKRYMALYLSANRK
Ga0193607_100003756F074217AGGAMSQQPELTPKQQALMDFLNELATTPLTPEALAQGNALLDDAADECQQQQDSLRQQQEGANNA
Ga0193607_100003762F026168AGGGGGVSETLGVYNEGDRPLRPQPPPSFETQIKALPPAVRSVAESLALRDMEGAKRYVALYFSANRGVKI

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