NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193595_1017923

Scaffold Ga0193595_1017923


Overview

Basic Information
Taxon OID3300018890 Open in IMG/M
Scaffold IDGa0193595_1017923 Open in IMG/M
Source Dataset NameSoil crust microbial communities from Colorado Plateau, Utah, USA - mid-late stage, bundles v1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterQB3 Vincent J. Coates Genomics Sequencing Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2518
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events

Source Dataset Sampling Location
Location NameUSA: Utah, Colorado Plateau, Green Butte Site
CoordinatesLat. (o)38.712053Long. (o)-109.695097Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005661Metagenome / Metatranscriptome393Y
F006886Metagenome / Metatranscriptome362Y
F058553Metagenome / Metatranscriptome135Y
F069716Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0193595_10179231F069716GGAGMLVNKSQPLVAGLLGASIVEFFVATALPFNDRIEYKIGNRIESQPAWLVPPKAEFRSLERGYGGIKILLALLSTGGMFLTMLIARSEGEQEPVRQRIKQYKNRAFEFGFVAESAYQMSTTATRYKKLAEADEVDFEGQIEQAYMESLGIDPSAQQPLLTG
Ga0193595_10179232F006886N/AMVAAGQYGPLFCMYQDFDASEFGSDFDYLNSETPQQFEQQNKTKKNEITNIERFWNLTGNWGEFGSYFSAALSASLIIRAIPALIPAAVILIPAAGLGVAVYSLAVDGTEKLRSQLILIAVGTALIAGNWDAWQAWIIANSQMLILSLALIVITVGFVAAQIWSKLSNVSK
Ga0193595_10179233F005661AGGAGMQFRVAQTSGAGHVAREFGYHSGPLTPEMVHEAARTAKILDLQKQLRTAYNRHDAKIRANKVELERLTLEAIESGLTDKAQIDKYVGKAIVAGAKHDQHIIDLSQQLQHELNLVKVQGASNQTLANTGFRQRLLLIKASHTAKGQIQQNSFAQNLKEIQASPQKAIAVQQKRSAFNNYINAKDFDPIPNMAGSSVGGNSSVSSNGKGFLDGLFGFLSGRN
Ga0193595_10179235F058553AGGAGMAQTRAVLPARFVPLADELLVATGVNDYSTLIGILLSRYGKHLLSTWEIANCPQATLATSQPYASVSIEQPETFTPMEF
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