NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193595_1007790

Scaffold Ga0193595_1007790


Overview

Basic Information
Taxon OID3300018890 Open in IMG/M
Scaffold IDGa0193595_1007790 Open in IMG/M
Source Dataset NameSoil crust microbial communities from Colorado Plateau, Utah, USA - mid-late stage, bundles v1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterQB3 Vincent J. Coates Genomics Sequencing Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3964
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Coleofasciculaceae → Allocoleopsis → Allocoleopsis franciscana → Allocoleopsis franciscana PCC 7113(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events

Source Dataset Sampling Location
Location NameUSA: Utah, Colorado Plateau, Green Butte Site
CoordinatesLat. (o)38.712053Long. (o)-109.695097Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074217Metagenome119Y
F094635Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0193595_10077905F074217AGGAGMSHEIELTPKQQALMDFLNQLAVTPLTPEKLAEGNVLLDAAADECRDLQQSLQQQAQGD
Ga0193595_10077909F094635AGGAGMALGSKSSTNGHRTSSHSPGSDAATGISRAVVLILTTPARLINWLTTPPGNAIMIGLGVLYFGSVSAEGYWQAMNPNNPAFVPKPFVSDGADLKFIFTALIAPSFWMAAVVSLIVQGIQAFVLREIDLAKAKAEYEAIKDYRVPDPEEGQLDLAEYRRRRFKSVGMRTVRTRGALIALTYAIDAGIAFWNYPVMGQSTGEMVINLVWILASIFGTEAMINLFFNAIAPIKPQVEVLPN

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