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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300018890 Open in IMG/M |
| Scaffold ID | Ga0193595_1003965 Open in IMG/M |
| Source Dataset Name | Soil crust microbial communities from Colorado Plateau, Utah, USA - mid-late stage, bundles v1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | QB3 Vincent J. Coates Genomics Sequencing Laboratory |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5650 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Utah, Colorado Plateau, Green Butte Site | |||||||
| Coordinates | Lat. (o) | 38.712053 | Long. (o) | -109.695097 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011201 | Metagenome / Metatranscriptome | 293 | Y |
| F042710 | Metagenome | 157 | N |
| F083444 | Metagenome | 113 | Y |
| F096282 | Metagenome / Metatranscriptome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0193595_10039654 | F096282 | N/A | MRFEHRGWIIELFLVGIHHPNYPYKVWEQATAIWKVVIDGRENSGTRTGEREKVLADIKAFIDWRIDDPDMKNIF |
| Ga0193595_10039655 | F042710 | GGAG | MAENSGDNCERSQNFTASSARDCRYVDVLKARAEELGLDSDCVGDKRKRETWEAVLENHGEDKPAKPQFVVKPN |
| Ga0193595_10039656 | F083444 | GAGG | MLNNMSEVFSCEEVALENTHLLPEYGKKVIYFVTAMQGESKTFLYIGFTINLRRKFKSHHRKIEFEFLNRIGYQIKISWIVFPDGIREKEGQAVQMCYIRAFEPKLNDDHNSFATVQAEELKKQFENWEQGRYEYLKKQIENWEQSGDDKDTIIKKIWEVCKEPFDDKNLTLSSCKPQKTTV |
| Ga0193595_10039657 | F011201 | N/A | MKKSKAKSKMGHGGARPGAGRFPLWKHRPLKMVRLPVAFVEEILKLAHYMDQNDGRLPFSEASEDLGIISGHPSKSLSGEEIKELAAREKARKLAERVMVGDEWVLVSDETFRNQH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |