NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0193595_1001832

Scaffold Ga0193595_1001832


Overview

Basic Information
Taxon OID3300018890 Open in IMG/M
Scaffold IDGa0193595_1001832 Open in IMG/M
Source Dataset NameSoil crust microbial communities from Colorado Plateau, Utah, USA - mid-late stage, bundles v1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterQB3 Vincent J. Coates Genomics Sequencing Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8266
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events

Source Dataset Sampling Location
Location NameUSA: Utah, Colorado Plateau, Green Butte Site
CoordinatesLat. (o)38.712053Long. (o)-109.695097Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005661Metagenome / Metatranscriptome393Y
F058553Metagenome / Metatranscriptome135Y
F093150Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0193595_10018325F005661AGGAGMQFRVGQTSGAAHVAEEFGYYSGPLTPEMVHDAARTAKILELQKQLRTAYNRHDAKIRANKVELERLTLEAIENGLTDKAQIDKYVDKAIIAGAKHDQHIVNLNHKLQHELGLIKVEGASTQTLQNMDFRQRLLLIKANHIASGQIQTNGFQQSLKAIQESPQQAIAQQHSRANFNAYINAKGFDPVPAVAGNSGGKSPIASNSQKGFLGGLFDFFSGRN
Ga0193595_10018327F058553AGGAGMAQTRAVLPSKFVPLADELLATTGASDYSTLIGILLSRYGKHLLSTWEIANCPQAAPIVQQLIAQQSIATETFTPMEF
Ga0193595_10018329F093150AGGAMNTLYHKVAVASVCTALSFALVANKEAKAAAFTLQPSTAYTLGDTNGQDGVADTIFGGASLPVGIINGEGYRHEYRASYEFNLGNLSLDPNTISRVLFRVDSNTISSYARFSRLDAYGYTGNGQADVSDFGAGEFLEGKYLYSVLLNPIPGIKPYFVFDVLPFISQSIKNNDTFGGFSLRIDDAYLTLNENASLTIITADVAEPVPEPTTIFGSALALSLGGWLKRKKSSQQNKTTPQA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.