Scaffold Ga0193595_1001172

Overview

Basic Information

• Taxon OID: 3300018890
• Scaffold ID: Ga0193595_1001172
• Source Dataset Name: Soil crust microbial communities from Colorado Plateau, Utah, USA - mid-late stage, bundles v1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: QB3 Vincent J. Coates Genomics Sequencing Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10118
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events

Source Dataset Sampling Location

• Location Name: USA: Utah, Colorado Plateau, Green Butte Site
• Coordinates
  • Lat. (^o): 38.712053
  • Long. (^o): -109.695097

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042667	Metagenome / Metatranscriptome	157	Y
F062306	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193595_100117211	F042667	GGA	MFGKWSVILRVDDSETVYSLVSGEHPEAVFIGSKKQCLKYIRDMSGGE
Ga0193595_100117212	F062306	AGGCGG	MFTQKTLQDLILHHSLEHQSCSVMVLLQALNQVTSRLDNIEALLEKRQKAETYQMKEVKRAMLSKIAGQLNHLEKTHFNTINDLTAEVKAVKQALENAKSKFIGFE
Ga0193595_10011722	F062306	AGGCGG	MFTQKTLQDLILHHSLEHQGCSVVVLLQVLNQVTERLDNIEALLEKRQKIETYQMKEVKRAMLSKIEAQLSHLEKTHLSTINDLTAEVKAVKQTLENAKSKFIGFE