NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193595_1000746

Scaffold Ga0193595_1000746


Overview

Basic Information
Taxon OID3300018890 Open in IMG/M
Scaffold IDGa0193595_1000746 Open in IMG/M
Source Dataset NameSoil crust microbial communities from Colorado Plateau, Utah, USA - mid-late stage, bundles v1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterQB3 Vincent J. Coates Genomics Sequencing Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12311
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events

Source Dataset Sampling Location
Location NameUSA: Utah, Colorado Plateau, Green Butte Site
CoordinatesLat. (o)38.712053Long. (o)-109.695097Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001042Metagenome / Metatranscriptome794Y
F007252Metagenome / Metatranscriptome354Y

Sequences

Protein IDFamilyRBSSequence
Ga0193595_10007464F007252AGTAGMNNKVHPFFEDVTLWELNMKKSKGKSKCGRGGARPGAGGGCRWKHGRTKLVRLPVALLDEILEVARYMDQNEGRLPPCATPVITSGHLSESLSGEELKEFLAKKKVRKLAEKVMCGDERVLVSDKTFAAFDIFDVPPAQKARSSSR
Ga0193595_10007467F001042AGGCGGMTTSHLIGENEASNVPKDLEAGADDTIVINKLLVNKLTELLINSIYSVHVSRRSEIFLTSLDMHLADFSISNKNDIVCREFTEKSSLLLESYQKDVPKSLGKAESCLGEAIDLINLIVSASVAEANNG

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