Scaffold Ga0193185_1033394

Overview

Basic Information

• Taxon OID: 3300018886
• Scaffold ID: Ga0193185_1033394
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_038 - TARA_N000000029 (ERX1782302-ERR1711968)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1033
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Indian Ocean: TARA_038
• Coordinates
  • Lat. (^o): 19.0393
  • Long. (^o): 64.4913
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049376	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193185_10333941	F049376	N/A	DDDDKYFTADPCQVVSQPEDVPEADRVPAVFPPQFSVDVVAGSDRWGRTTNPAGAAKTPFPPIIDSMYGQISGSWYVDITPDSDLWLLRHDTKYSHVAFNGTHIPLLGFHVSEIHSQTKAQQVANVTGPMVSLIDGLPNFAPGGCTCVPDPVGVPDVAHARSDGLDEMVYLGRINLTLAEYDGSNVVLDHWANWFFHVFMDVDKSVPHYGKAPKRLASAYAGTAVYANWNLTDPKLADPTVWTRGIPTTPERVGPSIGKYCMNPTKIDICNNISRTTFPPAPEAPPTAAAAPQGQIPWKTIHQSFMPSFTPPQKH