Scaffold Ga0192891_1008215

Overview

Basic Information

• Taxon OID: 3300018884
• Scaffold ID: Ga0192891_1008215
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_068 - TARA_N000000709 (ERX1789629-ERR1719186)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2331
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean: TARA_068
• Coordinates
  • Lat. (^o): -31.0507
  • Long. (^o): 4.6603
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085090	Metatranscriptome	111	N
F094857	Metatranscriptome	105	N
F104391	Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0192891_10082151	F085090	AGGAG	VCLDLLGWLASLDQLASLDPLVYRAALERLDHRDNPEPRAIAVSLAFRVFLDPSDHKDRRDLQAKMERMESQVQWAGAVLQDLMDPWVVWATLVLLDQEDHQVRKAREVHLASL
Ga0192891_10082152	F094857	GGA	LVARALLEPLACPDKRAQMDQGDPQAKEDHQELKVCQAWRAAREPLVLMDQMDLLDHLDLVGLLGIEEFLVFQALPAQLEQQANKDHKEKGEILASQESKALRDLLGLLVLLGLLVSVVSEVRRVHQESRELQGWAAGLVTRVHLEQQE
Ga0192891_10082154	F104391	N/A	MKGNEDQQASLVKGECLVNSDPLDQEAKMDLKDQMVNLDHLDPKDLPDTKDPLGWLVYLVSEEFLGLKVQRVEEVIQAFLDQLVLMAEQAKEVNKVLLVLQDPLERLEVLEIQGRQDLLENRGQLV