Scaffold Ga0193600_1001212

Overview

Basic Information

• Taxon OID: 3300018877
• Scaffold ID: Ga0193600_1001212
• Source Dataset Name: Soil crust microbial communities from Colorado Plateau, Utah, USA - late stage, 42 hrs after wetting v1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: QB3 Vincent J. Coates Genomics Sequencing Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5941
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events

Source Dataset Sampling Location

• Location Name: USA: Utah, Colorado Plateau, Green Butte Site
• Coordinates
  • Lat. (^o): 38.712053
  • Long. (^o): -109.695097

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011201	Metagenome / Metatranscriptome	293	Y
F042710	Metagenome	157	N
F083444	Metagenome	113	Y
F096282	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193600_10012121	F042710	GGAG	MAEKSGENCERSQNFTASSARDCRYVDVLKARAEELGLDSDCVGDKRKRETWEAVLENHGEEKPAKPQFVAKPNQL
Ga0193600_10012122	F083444	N/A	MSQVFSLEEIVWENTHLLPEHDKKVIYFVTTMQGESKTVLYIGFTVNLRKNFKNHHRRIEFEFLNKIGYQINISWIVLPDGTSHKEAQAVQMCYIRGFKPKLNHDQNSVAKVQDEELKKHIESRQQWRYEYLKKQIENWEQSGEDKDTIVKKIWEVCKEPVGDKNLNSLAT
Ga0193600_10012123	F011201	N/A	LKQSHNSNKTMKKSKAKSKIGHGGARPGAGRLPLWKHRPLKMVRLPLAFVEEILKVAHYMDQNDGRLPFSQASEDLIIISGHPSKSLSGEEIKELAAREKARKLAERVMVGDEWVLVSDETFRNQH
Ga0193600_10012126	F096282	N/A	VFPGYLKLLFTLSTTMKFQHRGETVELLLVGIHHPHYPDKIWELAKAVWKVEYNGKESCGTRSGDRDEVVADIKRGIDWLIDDPDMKNIF