Basic Information | |
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Taxon OID | 3300018876 Open in IMG/M |
Scaffold ID | Ga0181564_10238466 Open in IMG/M |
Source Dataset Name | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011513CT metaG (megahit assembly) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1038 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 31.972 | Long. (o) | -81.028 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F017050 | Metagenome / Metatranscriptome | 243 | N |
F073156 | Metagenome / Metatranscriptome | 120 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0181564_102384661 | F073156 | GGA | MTILGCITKYKPQDIRPYVESIEQTGFKGRKVMLVYEVPQETIDYLKSKGWDLYGGQLQQHIILQRFRDLYKLLGSEIKGPVIWTDVKDVIFQVDPTNWIELYMEGDILSFSECITMKDDPWACVN |
Ga0181564_102384662 | F017050 | N/A | YEGDVDGYTKVGEELGATVTRNNFQLGYCGNFGDRNIGYEHWTKEKAVEWLRGVYDACKKTDSRYMMLFEEDDFVLDTISILNLDFSMAIHPTAPSPTGRMRANNIPYKFLEYSKSVGGVDFCPGYASGGGTIFNREEYIDAYERTLDLYTENFDEFCKINKIYGWQDFLFQYIMMLGGYEIIQNTKLCELWEVPNFQEFEILTGCKDPNLVKI |
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