Scaffold Ga0193553_1034517

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193553_1034517

Scaffold Ga0193553_1034517

Overview

Basic Information
Taxon OID	3300018873 Open in IMG/M
Scaffold ID	Ga0193553_1034517 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_093 - TARA_N000001098
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1374
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	South Pacific Ocean: TARA_093
Coordinates	Lat. (^o)	-33.9116	Long. (^o)	-73.0537	Alt. (m)		Depth (m)	35
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004175	Metagenome / Metatranscriptome	449	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193553_10345171	F004175	N/A	LIDVTLACEDTNSKLVEVVTVVDDDDKKRVDNSLVEDEIWS

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