NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187844_10121300

Scaffold Ga0187844_10121300


Overview

Basic Information
Taxon OID3300018868 Open in IMG/M
Scaffold IDGa0187844_10121300 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1164
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002149Metagenome / Metatranscriptome589Y
F009734Metagenome / Metatranscriptome313Y

Sequences

Protein IDFamilyRBSSequence
Ga0187844_101213001F009734N/AIFFLSDDGIRSLIRSASDDFTSVGLPISEVVKDVIQEINTAQIGISTAAYYDNRYLLAVPTGSNNFNDTILVYNTILGAFEGTWTPKVMQFALTNFQSEGLRLMMKLTTGQINKYSGYKTPAQTTSADYVDFGIQSNGTSVGTFDFSSSVRTRDMDFGDPFAQKHGSNFEIIFDDSYSNNATIAIQRDSDVGDVEVQPNLNIASTVLVLPFVLPAVLPTSVKKRIASDLRKYEKWRLINISVTSEANKMAVRQITAAANPDTIEVQKTI
Ga0187844_101213002F002149GAGGMTAVEYIEESGVPESMWPNLAEWYGWFEKQGMVGIVEDKDGIAGVALARCLKDGQEPKHYEHTEDGENVFVDLTISSKGAKSLRCLLLLLWERFGPRKRITFNRSGKPRSYCYMTFMRK
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