Scaffold Ga0187844_10025434

Overview

Basic Information

• Taxon OID: 3300018868
• Scaffold ID: Ga0187844_10025434
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2982
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F022400	Metagenome	214	Y
F024719	Metagenome / Metatranscriptome	204	Y
F027758	Metagenome	193	Y
F029021	Metagenome	189	Y
F034906	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187844_1002543410	F029021	GAGG	MKDLCQFCGWEIARVDWYHRYNSKLICDNCVMDTMSEREKENAK
Ga0187844_1002543412	F024719	AGAAGG	MSNVVELPNRNKITVVFYEVSDPQDIAVWGGESPREALDWYRRSPAGSKIWVSQYEADEEEARLVLDLIEITPIVLATITDSIDRWSK
Ga0187844_1002543413	F034906	GGAG	MSKLKKRLQSAADQAVRQRNYQRARQRALTRLANDYPYVYRKYLEQEKKVDESMGKKWLDIDGNTSLADTGTQ
Ga0187844_1002543414	F022400	AGG	MRRTTTERSQRSTLRLVSAGVGESGSASSPFGPVRAGLITTQRTNEVVQLTELLNYLERKIAEANIKSLEVLNTYLNDTEHPAKQIVSFPNTDTING
Ga0187844_100254342	F027758	GAG	MLIDLFLVSFWVFGFFFLAGGLAWLTDRLASFHLEGMKRVRKLQAREKEREGAR
Ga0187844_100254349	F006842	GAG	MKATPVMCGDHLVPITECDCLSYMREIESSAKRLIQLAKEREEMK