NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187844_10018566

Scaffold Ga0187844_10018566


Overview

Basic Information
Taxon OID3300018868 Open in IMG/M
Scaffold IDGa0187844_10018566 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3601
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008303Metagenome / Metatranscriptome335Y
F011483Metagenome290Y
F035217Metagenome172Y
F058678Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0187844_100185662F011483GAGGLNLGVRYMTYDLVAYLRSEIKELHSILNETQIALAQANVRLNRRSEPLTEERVYTLYRRSLDWRQLARDIEAEHDIE
Ga0187844_100185666F008303GGAMIDKLIISAVLGVVWFNGLFPDPPQPLTGRQLQVKAKEASKSAVCDKSKKQSKTLQQLCKRWGKDD
Ga0187844_100185667F058678GGAMKEAPAPRLRREMTKNGRAVNVKLTQSEYDEWEKLGKGKWLRSFLKDSRFARGQA
Ga0187844_100185668F035217GGAGMNDEDDAFNEMEKRSLWRKRAVQATMSLNPYRNQIIEEVAIEVEKMQGFGKDTIDSLTVYIRDMKA

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