Scaffold Ga0187844_10018566

Overview

Basic Information

• Taxon OID: 3300018868
• Scaffold ID: Ga0187844_10018566
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3601
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008303	Metagenome / Metatranscriptome	335	Y
F011483	Metagenome	290	Y
F035217	Metagenome	172	Y
F058678	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187844_100185662	F011483	GAGG	LNLGVRYMTYDLVAYLRSEIKELHSILNETQIALAQANVRLNRRSEPLTEERVYTLYRRSLDWRQLARDIEAEHDIE
Ga0187844_100185666	F008303	GGA	MIDKLIISAVLGVVWFNGLFPDPPQPLTGRQLQVKAKEASKSAVCDKSKKQSKTLQQLCKRWGKDD
Ga0187844_100185667	F058678	GGA	MKEAPAPRLRREMTKNGRAVNVKLTQSEYDEWEKLGKGKWLRSFLKDSRFARGQA
Ga0187844_100185668	F035217	GGAG	MNDEDDAFNEMEKRSLWRKRAVQATMSLNPYRNQIIEEVAIEVEKMQGFGKDTIDSLTVYIRDMKA