Scaffold Ga0187844

Basic Information
Taxon OID	3300018868 Open in IMG/M
Scaffold ID	Ga0187844_10006692 Open in IMG/M
Source Dataset Name	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_50
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300018868 Open in IMG/M

Scaffold ID

Ga0187844_10006692 Open in IMG/M

Source Dataset Name

Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_50

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6834
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (73.68%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6834

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (73.68%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	46.008	Long. (^o)	-89.701	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

46.008

Long. (^o)

-89.701

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005846	Metagenome	388	Y
F010463	Metagenome	303	N
F024265	Metagenome	206	N
F037027	Metagenome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187844_100066921	F037027	N/A	DLWDFRAIRKGAGDEEQASSLQKDWDCGEEFLREFFKFGDERIFLRGNHDERIYDMARNSRSGVSRDYANDGIENIELIMKETKARMFPYDSVGGIYKCGNLSFVHGYGHAMHSGKQHADAYGDVIFGHTHAIDYFRSVSIDPRTGYNIGCLCNKTPEYNRGQLRRLRWQHGWAFGMIYPDKTHDVFQARQRGNKFHLPTNIKSF
Ga0187844_1000669216	F010463	N/A	MVLAATIHRVKLCEDKLREFEQMVSTLTSTMAQNRAELASKGLERFVIGVTTPLDIPKELIPTRGKDGARRNREYSTVKKRWTLWKHQLDSGMSMSELARAWGVHRTTIMNAKSRNFAVRKAKGGSR
Ga0187844_1000669218	F024265	N/A	MNEAYTTPEAKANGILSDRYPGKELEKLYATTRNQATIDMLRDAVFTLITNEIPTCTIAEVLKKTHGAIQYHLRYLEGRGKIKRPNKRCHWTEVKRENQ
Ga0187844_100066925	F005846	N/A	MTSFPLPARPQPSAVPASHKEFAKRTSIEGKANGWRGLFDQETKQGYNRHGKFASNHNLMAERILGAGIKSRFVDCEIMGQRTKTGKGTIIVMDAFDPANPKPYAERMKEIEHLEAVTFDVPQNKLLRFFSLAHHKINSIWEEMNFQNNKAGEVIWEGFVMKAMDDGKYPYITNPNYCSPAWQKQRIRW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187844_10006692

Overview

Ecosystem & Geography

Associated Families

Sequences